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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaatttggcagtttggctgtcatactataagggtggtggtgtattgaatgcgtgagatgaatagctaatcatctattgggtactgaatgacatacaaaattcattgctgcctcttttttttctactgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G058252_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176423|gb|BM351382.1|BM351382
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|9733260|gb|BE512012.1|BE512012
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|18168539|gb|BM338379.1|BM338379
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|32932015|gb|CF036827.1|CF036827
EST:     GTACAAGGGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAATACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTACAAGGGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|6020407|gb|AW065335.1|AW065335
EST:     GCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGNAAACCTGGGA
genomic: GCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|30052148|gb|AI065437.2|AI065437
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|9953187|gb|BE639770.1|BE639770
EST:     GTTATCTTGCGTTCTGTGGACTCATATATGNAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGG
genomic: GTTATCTTGC-TTCTGTGGACTCATATATG-AATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGG
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTTTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|15053713|gb|BI359258.1|BI359258
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|45847499|gb|CN071442.1|CN071442
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
EST: gi|15053712|gb|BI359257.1|BI359257
EST:     GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG                         CTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA
genomic: GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAGgtactaattt ... ctgcgtgcagCTTGCCAACACTGAGGAGTACATTGATGGTCAATTCTCTGGAAACCTGGGA