Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag

Basic information

species Zea mays
transcript GRMZM2G058252_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag----
|| |||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||  |||    ||    |||| ||           |||   |  |  |   | |||   ||    || ||| | |||||  | | | |  |    |     
ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgtaatctatacttttacctttcacttcttcttcacttattacatgcttaagccagtgct--tgaaaatt-tcagaatgaaatctctgagatttcaggaaatcc

upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttat-ctcctttttgttcagtttaa---accagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag
|| || ||||||||||| || |||||  |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||  ||| ||  |    ||    ||| |   ||    |   || |  |    | |       | |      |||   ||||   ||     |||||   | 
ACTGTGCCAGTTAACCCGAAGCCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGgtaatctatacttttacccgtcacattttattcactgatatgcttaggctagtgattgaaatttcagaatgaaatct--ctgaggtttcaggaacattgaaa-

upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G07060.1 (Glycine max), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacattttgttttccaaatactgccgctgctcttt-atcaaactgaaaattattatacattcccag
||  | |||||||| || || |||||  |||||||  |||| || |||||||| ||||| ||||| |||||||| |||||||||||||||| |          |||| |     |  | || |   || |  | |    || |  |   | | |||| ||    |||  | ||  | |   ||  |||
ACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGgtatgagtatgatgctttgcta----tggatca-attgttctactgtt---attccactcttacactttcatttcgctgttattttgttttatttttcag

upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G21250.1 (Glycine max), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacatt-ttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag------------------------------------
||  ||||||||||||| || |||||  |||||||  |||| || ||||| || ||||| |||||||||||||| |||||||||||||||| |          |||||   |  | ||       | | || ||| ||   |||     |   ||  | |  ||  |  |  |  |  |   |                                         
ACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGGgtatgactatgatgctttgtaatgagtcaattgttctactgttatttccctgttacactttcatttcagtgtttaatcgttagcttgtgcatgatttttttttatcatgtattcactgtgttattttatttttcag

upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s0220g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgt-------tcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag
||||| ||| | ||||| || || ||  |||| ||| |||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || || |  ||| ||       ||| || ||| |      |||| |||||  || | |  |   | | ||| |                            
ACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAGgtaaattctcccgctttcgtctgtggttcaattgaaatctatgattttttttttcttaacattttcttgggtttttttag--------------------------

upper sequence: GRMZM2G058252_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S219_41V6.1 (Physcomitrella patens), 5'ss of exon 2
ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatctcctttttgttcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccag--
|| || || || || || || || ||||||||| || |||| || ||||| || ||||| |||||||||||||| ||||||||||| |||    |   |  ||  |||      |   | |      |  ||| | ||  |  || |||||   |    ||| |||    ||  ||| ||| |||    
ACAGTGCCTGTGAATCCGAAGCCCTTTCTGAACGACTTGACTGGGAAGCCGGTCATTGTGAAACTCAAGTGGGGCATGGAGTACAAAGgtgctctgctttgttcctgtctctcctgttctaactgtctgggttgtacagctgttgtcgctgtgatgccgcaagctgttcttt-ctattcatacccttcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176423|gb|BM351382.1|BM351382
EST:     AGGANAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: AGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211439749|gb|FL418521.1|FL418521
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211084505|gb|FL378043.1|FL378043
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|40336095|gb|CK370165.1|CK370165
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211311342|gb|FL401413.1|FL401413
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211450560|gb|FL421157.1|FL421157
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211500293|gb|FL429987.1|FL429987
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211401205|gb|FL425452.1|FL425452
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|32906951|gb|CF011764.1|CF011764
EST:     GACAGG-AAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211443716|gb|FL399729.1|FL399729
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|9733260|gb|BE512012.1|BE512012
EST:     AGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: AGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211104786|gb|FL388174.1|FL388174
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211445444|gb|FL381391.1|FL381391
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211443104|gb|FL373028.1|FL373028
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211024433|gb|FL373972.1|FL373972
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211302695|gb|FL370644.1|FL370644
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211045553|gb|FL403377.1|FL403377
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|18168539|gb|BM338379.1|BM338379
EST:     GCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|213182763|gb|FM187281.1|FM187281
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211303208|gb|FL395167.1|FL395167
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|76292086|gb|DV031654.1|DV031654
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211394994|gb|FL377436.1|FL377436
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211429137|gb|FL408427.1|FL408427
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|60347187|gb|DN214160.1|DN214160
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211436448|gb|FL384524.1|FL384524
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211278511|gb|FL371989.1|FL371989
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|9733261|gb|BE512013.1|BE512013
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACATGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211313369|gb|FL401428.1|FL401428
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGWATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211286499|gb|FL423658.1|FL423658
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211539230|gb|FL395839.1|FL395839
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|76292087|gb|DV031655.1|DV031655
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211542426|gb|FL402997.1|FL402997
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211309012|gb|FL381284.1|FL381284
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|32930046|gb|CF034858.1|CF034858
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|32908639|gb|CF013452.1|CF013452
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211092578|gb|FL396358.1|FL396358
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211539434|gb|FL405542.1|FL405542
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|60359558|gb|DN226531.1|DN226531
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|18176857|gb|BM351790.1|BM351790
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|9953187|gb|BE639770.1|BE639770
EST:     CCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCGTTCTGTGGACTCATATATGNAATCTCCAG
genomic: CCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGC-TTCTGTGGACTCATATATG-AATCTCCAG
EST: gi|211514457|gb|FL429043.1|FL429043
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211334839|gb|FL416312.1|FL416312
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|15053713|gb|BI359258.1|BI359258
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211531121|gb|FL427366.1|FL427366
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|6956550|gb|AW428645.1|AW428645
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211197152|gb|FL410127.1|FL410127
EST:     GACAGGAAACCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211530711|gb|FL414632.1|FL414632
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211521185|gb|FL395740.1|FL395740
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211154870|gb|FL390962.1|FL390962
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|32909820|gb|CF014632.1|CF014632
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211092584|gb|FL396364.1|FL396364
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211431945|gb|FL418470.1|FL418470
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|45847499|gb|CN071442.1|CN071442
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|15053712|gb|BI359257.1|BI359257
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|22133617|gb|BQ833807.1|BQ833807
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 1346

ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 737

ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 717

ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG


Block sizes: 49 (upstream exon), 38 (downstream exon)
Score: 647

ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG