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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctctagtacccgcattgcctccgctgagttataggtgaagtgtgctcgatcggcgagctctgtaacttgagggtttgtcttcgtgtttgccag...

Basic information

species Zea mays
transcript GRMZM2G057251_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057251_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g48020.1 (Oryza sativa), 5'ss of exon 2
CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctctagtacccgcattgcctccgctgagttataggtgaagtgtgctcgatcggcgagctctgtaacttgagggtttg---tcttcgtgtttgccag---
||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||  | ||||||||| | | ||||       || | || |  || |||| | ||||||   |||| |||| |||    ||||  |  ||||  | |   ||| | |||||    |   
CCGCGCCACGGTGGTCGCGCTCAACGCGGAGATCCGGCGAACCAAGGCCAAGCTCGTCGAGGAGGACCTGCCCAAGCTGCAGCGCCTCGCGCTGAAGAAGgttactgatcta-----tacactcccccttcttagtt-tgggtgaatcatgctagatctgcggatactgtggcccgaggactcggtctctccttgttttagtgtag

upper sequence: GRMZM2G057251_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g49150.1 (Oryza sativa), 5'ss of exon 2
CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgcc---gctctagtacccgcattgcctccgctgagtt--ataggtgaagtgtgc-tcgatcggcgagctctgtaacttgagggtttgtcttcgtgtttgccag
||| ||| ||||||| ||||| ||||| ||||||||  | || ||||||||||||||||||||||| || |||||||||||||| |||||| | |||||||||      |||    ||  |   |  |||| | ||   |  |||| |     || | | |||  || || |   |     ||||   | | ||| || ||     
CCGCGCCACGGTGGTCGCGCTGAACGCGGAGATCCGCGGAACGAAGGCCAAGCTCCTCGAGGAGGATCTGCCCAAGCTGCAGCGGCTCGCCCTGAAGAAGgttattgatgcttctctagtcctctctcctctgttgctctgcatagctagtcggtacgtagatatgcaaggtggttggtgcgaggagct-tgttcctgctt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082805|gb|DV511198.1|DV511198
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|74237329|gb|DT645243.1|DT645243
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|71770367|gb|DR968304.1|DR968304
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|76936954|gb|DV174978.1|DV174978
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|60338253|gb|DN205226.1|DN205226
EST:     CCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: CCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211512978|gb|FL131661.1|FL131661
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|76018601|gb|DT945771.1|DT945771
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|78076771|gb|DV505205.1|DV505205
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|60397948|gb|DN230764.1|DN230764
EST:     GAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: GAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|149088922|gb|EE178063.2|EE178063
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515339|gb|FL131682.1|FL131682
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|71299507|gb|DR785763.1|DR785763
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515335|gb|FL131678.1|FL131678
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211512981|gb|FL131664.1|FL131664
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211512983|gb|FL131666.1|FL131666
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGC-TCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: gi|211512972|gb|FL131655.1|FL131655
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|67038186|gb|CO464516.1|CO464516
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211517692|gb|FL131690.1|FL131690
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515328|gb|FL131671.1|FL131671
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         ---AAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: gi|71314556|gb|DR793900.1|DR793900
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGGTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|78086622|gb|DV515015.1|DV515015
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|74235878|gb|DT643792.1|DT643792
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515326|gb|FL131669.1|FL131669
EST:     AGCTCCTCGAGGAAGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATCGCGACCCGTAGTGATCT
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCT
EST: gi|148932647|gb|EC876561.2|EC876561
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515331|gb|FL131674.1|FL131674
EST:     AGCTCCTCGAGGAGGACCTCCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTG
EST: gi|15313737|gb|BI478932.1|BI478932
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211517691|gb|FL131689.1|FL131689
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|211515338|gb|FL131681.1|FL131681
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|76281470|gb|DV021038.1|DV021038
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|149015005|gb|EE044748.2|EE044748
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
EST: gi|149070317|gb|EE158717.2|EE158717
EST:     AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAG                         GTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC
genomic: AGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 133

CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 148

CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 158

CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 132

CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctc ... ctttgaacagGTGAAAGGGCTGACAAGAGAAGAAATTGCGACCCGTAGTGATCTGGTTGCCGCTTTACCTGACAGAATACAATCAATCCCAGATGGTAGTTCTACTGCCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGGCCGCGGTGGTGGCGCTTAACGCCGAGATCCGGCGCACCAAGGCCAAGCTCCTCGAGGAGGACCTTCCCAAGCTGCAGCGCCTCGCCGTTAAGAAGgttgccgctctagtacccgcattgcctccgctgagttataggtgaagtgtgctcgatcggcgagctctgtaacttgagggtttgtcttcgtgtttgccag

- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc