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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGCCTGGGCGAGCTGTTGCTGAGCCTGGCCGGAGGTCATGGGATGGCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggatttatcgaatactcatgtatgaaatttgtcagtccataacgttgatagatcaaactatagcgaattggtgcttatgcatctgtttggaacc...

Basic information

species Zea mays
transcript GRMZM2G056975_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 2
AGCATGGCCTGGGCGAGCTGTTGCTGAGCCTGGCCGGAGGTCATGGGATGGCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggattt-----atcgaatactcatgtatgaaatttgtcagtccataacgttgatagatcaaactatagcgaattggtgcttatgcatctgtttggaacc
|||||||||||| ||||| |||| ||| |||||  ||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || || ||||||||||| |||        ||| || | | | | ||| || ||   | |||||| | ||  || |||   |  | | |   | || | |     | || |       
AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaacatcaagatctaagattaacggatggaaattaatactccataccttttttatatctgtcagttgtg--ctagtacatcaatgtttggtcaat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125884|gb|BG316454.1|BG316454
EST:     GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAG                         ACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGATTTGTTGCTCTT
genomic: GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggat ... taatgcaaagACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGAGTTGTTGCTCTT
EST: gi|71445035|gb|DR826085.1|DR826085
EST:     GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAG                         ACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGAGTTGTTGCTCTT
genomic: GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggat ... taatgcaaagACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGAGTTGTTGCTCTT
EST: gi|149066676|gb|EE286811.2|EE286811
EST:     GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAG                         ACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGAGTTGTTGCTCTT
genomic: GCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggat ... taatgcaaagACATTGGACATTGTTGCGGAGAATCCTGATAAGTTCAGAGTTGTTGCTCTT