1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACGCCTCCGGTCGGATTCTTCGCCGTCCTTGTCCCCACTGGGCACCGCTGGGGTGGAGCGGAGATCGGATCCGCCGGGAGCTGATTCCTTCTCTCGCAGgttagatgcctttactttcttcgattgactgctcgtgttattctgcaattctcagttttgctgtgaacgctgaatcaaatgtttctttcgttgcgttcag
species | Zea mays |
transcript | GRMZM2G056166_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATCCGCCGGGAGCTGATTCCCTCTCTCGCAG TCTAGTTTGACGCTGATTCATTTGCTGGTCGGCATAGCATGATCCTGCGGTEST: gi|61119849|gb|DN560810.1|DN560810
genomic: GATCCGCCGGGAGCTGATTCCTTCTCTCGCAGgttagatgcc ... ttgcgttcagTCTAGTTTGACGCGGATTCATTTGCTGGTCGGCATAGCATGATCCTGCGGT
EST: GGGGTGGAGCGGAGATCGGATCCGCCGGGAGCTGATTCCTTCTCTCGCAG TCTAGTTTGACGCTGATTCATTTGCTGGTCGGCATAGCATGATCCTGCGGT
genomic: GGGGTGGAGCGGAGATCGGATCCGCCGGGAGCTGATTCCTTCTCTCGCAGgttagatgcc ... ttgcgttcagTCTAGTTTGACGCGGATTCATTTGCTGGTCGGCATAGCATGATCCTGCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGCCTCCGGTCGGATTCTTCGCCGTCCTTGTCCCCACTGGGCACCGCTGGGGTGGAGCGGAGATCGGATCCGCCGGGAGCTGATTCCTTCTCTCGCAGgttagatgcctttactttcttcgattgactgctcgtgttattctgcaattctcagttttgctgtgaacgctgaatcaaatgtttctttcgttgcgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT