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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAAACTGTATCAACCTGTCAACAAACCAGTCAAGAACTATGCTTTAGTTGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagacatagctcatctgtctttcctatatttttgtaggaaagtatcattaaaacacatttgcattttgatgtagaacag

Basic information

species Zea mays
transcript GRMZM2G055458_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440580|gb|DR821630.1|DR821630
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
EST: gi|50337459|gb|CO532585.1|CO532585
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
EST: gi|211049191|gb|FL204538.1|FL204538
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
EST: gi|211049189|gb|FL204536.1|FL204536
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
EST: gi|101387490|gb|EB815760.1|EB815760
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
EST: gi|211049192|gb|FL204539.1|FL204539
EST:     TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATG                         CAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA
genomic: TGTTCTAAACCAGCATCTTCCACGATTCATGCCTCGACTCTGGGATCATGgtaactagac ... tgtagaacagCAAACTTGAGGATCTGCGCTGATGGAGGAGCTAATCATATTTTTGATGAGA