1 5' 3' | 2 5' 3' | 3 5' 3' |
TGATGATGACGACAATGGGAAGACGGCTGCAAAGCTTGAGAAGCAGTATAACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAGgtaacggttaacaagaatatgtgatcagttttgtcagtcactacatcgtgcctttagtcttaacttatgtctcctgctctgctaaatggttggttatata...
species | Zea mays |
transcript | GRMZM2G055334_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAG CTTGTAGCAGCCTACAAATGCCCACCGGTTTTCTACATCATCACCGAGTTCEST: gi|211463217|gb|FL127608.1|FL127608
genomic: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAGgtaacggtta ... gctaatgcagCTTGTAGCAGCCTACAAATGCCCACCGGTTTTTTACATCATCACCGAGTTC
EST: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAG CTTGTAGCAGCCTACAAATGCCCACCGGTTTTCTACATCATCACCGAGTTCEST: gi|213170036|gb|FM192834.1|FM192834
genomic: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAGgtaacggtta ... gctaatgcagCTTGTAGCAGCCTACAAATGCCCACCGGTTTTTTACATCATCACCGAGTTC
EST: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAG CTTGTAGCAGCCTACAAATGCCCACCGGTTTTCTACATCATCACCGAGTTC
genomic: ACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAGgtaacggtta ... gctaatgcagCTTGTAGCAGCCTACAAATGCCCACCGGTTTTTTACATCATCACCGAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATGACGACAATGGGAAGACGGCTGCAAAGCTTGAGAAGCAGTATAACAGTGAGATCAATTCGTTGTCTCACCTGTACCATAGGAACGTGATCAAGgtaacggttaacaagaatatgtgatcagttttgtcagtcactacatcgtgcctttagtcttaacttatgtctcctgctctgctaaatggttggttatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaagaa