1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtattttttcgtttctcttagatctgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgc...
species | Zea mays |
transcript | GRMZM2G054136_T08 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT GCGTGCCTTTTATGACCGAA-GATATCCCAGGAGEST: gi|211199270|gb|FL277457.1|FL277457
genomic: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgttt ... tcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAG
EST: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT GCGTGCCTTTTATGACCGAA-GATATCCCAGGAG
genomic: CCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgttt ... tcaactatagGCGTGCCTTTTATGACCGAAGGATATCCCAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtattttttcgtttctcttagatctgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgc
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC