1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAAGAGGCACAATTTCTTGGAGTACAAGAGGGAGGGCGGCCACCGCGAGGCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttttctatccccgctatctcttgcttgcctgtttaatcatctctgtagtttgtattggatcagtagtaggattgctttatgttgaattctcaacgaagcatttgatcaaggatacactgaaaattttggactgttgggtggcag
species | Zea mays |
transcript | GRMZM2G053767_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211353119|gb|FL043799.1|FL043799
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCEST: gi|50324261|gb|CO519387.1|CO519387
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGG-ATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGC
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|71438629|gb|DR819679.1|DR819679
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211353120|gb|FL043800.1|FL043800
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: -CGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATTCATAAAGCEST: gi|211245445|gb|FK950833.1|FK950833
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACAT-CATAAAGC
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|31611944|gb|CD568566.1|CD568566
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: CGCTCGTCACACAGCGCTACCGCCTCGGGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211430616|gb|FL465154.1|FL465154
genomic: CGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|31664102|gb|CD573282.1|CD573282
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: AGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211353121|gb|FL043801.1|FL043801
genomic: AGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: CGCTCGTCCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|78122122|gb|DV540506.1|DV540506
genomic: CGCTCGTC-ACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|60343595|gb|DN210568.1|DN210568
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: CAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|33103763|gb|CF063723.1|CF063723
genomic: CAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTCGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|71759525|gb|DR957462.1|DR957462
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCAEST: gi|211353122|gb|FL043802.1|FL043802
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
EST: GCGCTCGTCACACAGCGCTACCGCGTCGTGGAGAGGGACGACTACMAGAA GTACAATGGGATATGCTTAATGGTGCEST: gi|50325006|gb|CO520132.1|CO520132
genomic: GCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGC
EST: GGGACGACTACAAGAA GTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
genomic: GGGACGACTACAAGAAgtgggttttt ... tgggtggcagGTACAATGGGATATGCTTAATGGTGCAAAAGCTCGTTAACATCATAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAGGCACAATTTCTTGGAGTACAAGAGGGAGGGCGGCCACCGCGAGGCGCTCGTCACACAGCGCTACCGCCTCGTGGAGAGGGACGACTACAAGAAgtgggttttttctatccccgctatctcttgcttgcctgtttaatcatctctgtagtttgtattggatcagtagtaggattgctttatgttgaattctcaacgaagcatttgatcaaggatacactgaaaattttggactgttgggtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG