Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattttattgaagttcatgtatggagttaacatttccttacctgttcttatttggctgcaaaatgcag

Basic information

species Zea mays
transcript GRMZM2G053764_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053764_T06 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G46940.1 (Glycine max), 5'ss of exon 3
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattt-tattga--agttcatgtatggagttaacatttccttacctgttcttatttggctgcaaaatgcag------------------------
 ||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||||| ||||  || ||  |||     |     || | | ||||||  |||| |  | || | |  | ||     ||  |||   |   ||  |   |  ||                           
-TGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagtttacatgtgtattagatataagaataattgtgtgtcggtgcgtctgatctgatcatcttggataacattaatttcagg

upper sequence: GRMZM2G053764_T06 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattt-tattgaa-gttcatgtatggagttaacatttccttacctgttcttatttggctgcaaaatgcag
|||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| || || ||||||||||| |||||||| ||||| |||||||||| ||||  || ||  |||     |     || | | ||||||    |   || |  | |      |    ||  || |   || |   |  | |||  | 
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat

upper sequence: GRMZM2G053764_T06 (Zea mays), 5'ss of exon 2
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattttattgaagttcatgtatggagttaacatt--tccttacctgtt---cttatttggctgcaaa-atgcag
|||| |||||| | || || ||||| |||||||| |||||||| ||||| || ||  | || ||||| | ||| || || ||||||||||||||||| |||||||    || |  | |    || ||||       |  | | |||| |      | |    | |  | ||||  ||||   | | ||||  ||     ||||||
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcagtagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttgttatccctctttgtatgtggttatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76931861|gb|DV172876.1|DV172876
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGAT                         GTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
EST: gi|76294184|gb|DV033752.1|DV033752
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGAT                         GTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT