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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatggtcttaaactatttttcttattttattgaagttcatgcatggagttaacatttccttacctgttcttatttgactgcaaaatgcag

Basic information

species Zea mays
transcript GRMZM2G053764_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G46940.1 (Glycine max), 5'ss of exon 3
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatggtcttaa-actatttttcttattt-tattga--agttcatgcatggagttaacatttccttacctgttcttatttgactgcaaaatgcag------------------------
 ||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||  || ||  |||  || |     || | | ||||||  |||| |    || | |  | ||     ||  |||   |   ||  |   |  ||                           
-TGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagtttacatgtgtattagatataagaataattgtgtgtcggtgcgtctgatctgatcatcttggataacattaatttcagg

upper sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatggtcttaa-actatttttcttattt-tattgaa-gttcatgcatggagttaacatttccttacctgttcttatttgactgcaaaatgcag
|||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| || || ||||||||||| |||||||| ||||| |||||||||| ||||  || ||  |||  || |     || | | ||||||    |   |  |  | |      |    ||  || |   || |   |  | |||  | 
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat

upper sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G03940.2 (Glycine max), 5'ss of exon 3
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatg-gtcttaaactattttt------cttattttattgaagttcatgcatggagttaacatttccttacctgt----tcttatttgactgcaaaa--tgcag
|||| ||||| || || || || ||||| ||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||| |  ||  ||  | ||  | ||||  |      ||   |   ||||      ||| | | |||||  ||   |    |||    || |||| || |  || |  | |||
GTGTATGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaaaaatattgtattttttaatattgctgcgaaactctatactttgagtagtttgccttgtgttaattttaagtattgtgtgcgatcatattggattataataatttcag

upper sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 2
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatg-gtcttaaactattttt------cttattttattgaagttcatgcatggagttaacattt----ccttacctgttcttatttgactgcaaaatg----cag
|||| ||||| || ||||| || ||||| ||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||| || ||  ||  |  |  | ||||  |      ||   |   ||||      ||| | | |||||  ||        |   || || |||| ||    | |||     |||
GTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatcttgtattattgaatattgctgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcag

upper sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv02s0025g00070.t01 (Vitis vinifera), 5'ss of exon 3
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagc--attatggtcttaaactatttttcttattttattgaag--------ttcatgcatggagttaacatttcctt-acctgttcttatttgactgcaaaatgcag------------------
|||| |||| | | ||||| || || || ||||| |||||||| ||||| || || || || ||  |||||||||| || ||||||||||| |||||||||||||    |    || | ||||    |   | |  ||     ||        ||| |  ||      |||||       |  || | || |   |    | |||   |                  
GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5649980|gb|AI920340.1|AI920340
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGAT                         GTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
EST: gi|60396538|gb|DN229407.1|DN229407
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGAT                         GTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
EST: gi|5608383|gb|AI901960.1|AI901960
EST:     CATCAACAAGATTTATCACCCTAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
EST: gi|87156694|gb|DY401483.1|DY401483
EST:     CCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGAT                         GTCTGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT
genomic: CCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcatta ... caaaatgcagGTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTT