Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtcaacaagacggtaactttagttcccagttactacttgtgctagtaaagtaattaagattcagttctcccgtcctatacatctcctatgtcctaaccgatgctattgtattcctcgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G053004_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053004_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 5'ss of exon 2
CAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtcaacaagacggtaactttagttcccagttactacttgtgctagtaaagtaattaagattcagttctcccgtcctatacatctcctatgtcctaaccgatgctattgtattcctcgtgtgcag
|||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||| || || |||||||||  |   |     | |||  | ||| | || |  |  |||  |     ||| | |   | | |   ||   ||   | |  ||||||        |  |  |||| |    |||||   |||||
CAAGGATGGGTTTTCCTTTTCAGCTTAATCGGCATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAgtaagtgctactga-----ttactg-aattcactgtaa--atctgtaattacccagttagttgtactta---ctattgtgtcaaaattctcctgac-----attgtggctact----tcctctcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937004|gb|DV174997.1|DV174997
EST:     AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGA                         GCAACTTGCTTGCTACACTGGCCCAACAG
genomic: AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtca ... tcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG
EST: gi|76011413|gb|DT938583.1|DT938583
EST:     AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGA                         GCAACTTGCTTGCTACACTGGCCCAACAG
genomic: AGCTTAATCGGCATTACCCCGTTGGCCGAGAGATTGGGATACGCAACTGAgtaagtgtca ... tcgtgtgcagGCAACTTGCTTGCTACACTGGCCCAACAG