Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtatttttttccagtgaccatttttactaatatttggaatagttttcttgaagtggtcctgtattatgaagtacttaacttaccttgaagtttcattttg...

Basic information

species Zea mays
transcript GRMZM2G052880_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052880_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g25580.1 (Oryza sativa), 5'ss of exon 2
GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtatttttttccagtgaccatttttactaatat---ttggaatagttttcttgaagtggtc-ctgtattatgaagtacttaacttaccttgaagtttcattttg
|||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||     | |  |  ||| ||   | | | ||   ||    |    | | ||  ||   |  || || ||||   | |      ||    | |  || |    
GTTTATTATTTGAAATGCTCAGGTCAACTAGGAAACATTCAAAATCAACATGGAAGgtaaggaatcctgggcacctttcagattgacatggtttcttttgaggtccctgctgtatacattgaataatgataaagtcggaaaacacgtatgcatctt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211376580|gb|FL160476.1|FL160476
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371250|gb|FL160440.1|FL160440
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373914|gb|FL160460.1|FL160460
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371256|gb|FL160446.1|FL160446
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCAAATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371258|gb|FL160448.1|FL160448
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211504197|gb|FL160497.1|FL160497
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373918|gb|FL160464.1|FL160464
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373920|gb|FL160466.1|FL160466
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|50336915|gb|CO532041.1|CO532041
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373917|gb|FL160463.1|FL160463
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371251|gb|FL160441.1|FL160441
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501864|gb|FL160492.1|FL160492
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373908|gb|FL160454.1|FL160454
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376585|gb|FL160481.1|FL160481
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501859|gb|FL160487.1|FL160487
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCNAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGNCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376576|gb|FL160472.1|FL160472
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376575|gb|FL160471.1|FL160471
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|76280654|gb|DV020222.1|DV020222
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501861|gb|FL160489.1|FL160489
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373910|gb|FL160456.1|FL160456
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373916|gb|FL160462.1|FL160462
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATG
EST: gi|211376571|gb|FL160467.1|FL160467
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371255|gb|FL160445.1|FL160445
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501867|gb|FL160495.1|FL160495
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376582|gb|FL160478.1|FL160478
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501856|gb|FL160484.1|FL160484
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373909|gb|FL160455.1|FL160455
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376572|gb|FL160468.1|FL160468
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501854|gb|FL160482.1|FL160482
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376574|gb|FL160470.1|FL160470
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGAATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211504199|gb|FL160499.1|FL160499
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371253|gb|FL160443.1|FL160443
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501857|gb|FL160485.1|FL160485
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371261|gb|FL160451.1|FL160451
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501865|gb|FL160493.1|FL160493
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376578|gb|FL160474.1|FL160474
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373907|gb|FL160453.1|FL160453
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501860|gb|FL160488.1|FL160488
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373912|gb|FL160458.1|FL160458
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501858|gb|FL160486.1|FL160486
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGCCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376583|gb|FL160479.1|FL160479
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTA-AGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|93015686|gb|EB641206.1|EB641206
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371257|gb|FL160447.1|FL160447
EST:     TATTTGAAAAGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211501868|gb|FL160496.1|FL160496
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211371254|gb|FL160444.1|FL160444
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373911|gb|FL160457.1|FL160457
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376577|gb|FL160473.1|FL160473
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211504198|gb|FL160498.1|FL160498
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211373915|gb|FL160461.1|FL160461
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|76294182|gb|DV033750.1|DV033750
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|74234513|gb|DT642427.1|DT642427
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCACGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376573|gb|FL160469.1|FL160469
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
EST: gi|211376584|gb|FL160480.1|FL160480
EST:     TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG                         GTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG
genomic: TATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 116

GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 178

GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 239

GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 79

GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtattttttt ... tggcttctagGTTCTTATCATGGATAAGTTTACAGTCAAGATTATGTCATATGCATGTAAGATGGCAGATATTACAGAAGAAGGTGTTTCAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAGgtatttttttccagtgaccatttttactaatatttggaatagttttcttgaagtggtcctgtattatgaagtacttaacttaccttgaagtttcattttg

- - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG