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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATGTACCACTGCATCTCCATGGAGGAGATCACCAGGGCCTCCGGCGCCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgtacacccgtactcgtggctgctccaccgccctgcttgtttttgccctcgcacgccgcgttaaccacaccacttgggcggttacttattactactacccatgcgtagcgtaatgctgtttatgtgttctccgttgcag

Basic information

species Zea mays
transcript GRMZM2G052630_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052630_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g03480.4 (Oryza sativa), 5'ss of exon 3
CTACATGTACCACTGCATCTCCATGGAGGAGATCACCAGGGCCTCCGGCGCCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgtacacccgtactcgtggctgctccaccgccctgcttgtttttgccctcgcacgccgcgttaaccacaccacttgggcggttacttattactactacccatgcgtagcgtaa-tgctgtttatgtgttctccgttgcag
||||||||||||||||||  ||||||||||||||| |||||| |||||| | |||||||| || |||||||| ||||||||||||||||| |||||||| ||     || |   | |||| ||   ||   ||  ||| ||  ||     ||| |  ||       ||   || | || |        | || | |||   ||   |   ||   ||   || ||||| | | |            
CTACATGTACCACTGCATTGCCATGGAGGAGATCAGCAGGGCGTCCGGCTCGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgta--ctgttctgtc-tact-gtcattgtaacat-gccatgaatga----gccattaca------attggacaaaacaatct-----ctgctcaatacagttatgaacttgtgatgtgtctgatgtttgtttatag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149073457|gb|EE161762.2|EE161762
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAGCTCATC
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTG--C---C-CA--
EST: gi|76936508|gb|DV174756.1|DV174756
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAGCTCATC
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTG--C---C-CA--
EST: gi|149079538|gb|EE168523.2|EE168523
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAGCTCATC
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTG--C---C-CA--
EST: gi|31354622|gb|CD438979.1|CD438979
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAGCTCATC
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTG--C---C-CA--
EST: gi|67030645|gb|CO459394.1|CO459394
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAG
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAG
EST: gi|91057188|gb|EB167606.1|EB167606
EST:     CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTT                         GTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTGCCCAAGCTCATC
genomic: CCGTCGGCCTCTCCTACGGCGCGCACTCCAACCTCTGCATCAACCAGCTTgtgagtcgta ... tccgttgcagGTCCGGCACGGCAGTCCCGAGCAGAGGCTCAAGTATCTG--C---C-CA--