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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGACTGGTCCGGACCCTGATCTCACGGACCAGGAGAGGCTGATGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaacaactaaccctattcctatgtgctggtgtataaacaaacaagctcattgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcag

Basic information

species Zea mays
transcript GRMZM2G052546_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052546_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01750.2 (Oryza sativa), 5'ss of exon 14
---------------GGTTGACTGGTCCGGACCCTGATCTCACGGACCAGGAGAGGCTGATGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaacaactaaccctattcctatg----tgctggtgtataaacaaacaagctcat---tgggatgatcactcaggtggtactgggtactaacaagtata-tgcgtatgacatgaactgcag-----------------------
               | ||||||||||   | || ||||| ||| |  |||| ||||||||||| ||||||||||||||||||||||           ||||| |||  |    |||||| |   | | |  ||| |  |||     ||| || || |     |  | ||| ||   ||     |||| || | | | ||||   |||||   | | | |    ||   || | |  |                         
GAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGT---------TGAGCGATAGAGg--taagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactg--cactaatctgcagaattgacattggattatcgactcgttttgggctcgctgtgcaacag

upper sequence: GRMZM2G052546_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01750.5 (Oryza sativa), 5'ss of exon 13
---------------GGTTGACTGGTCCGGACCCTGATCTCACGGACCAGGAGAGGCTGATGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaacaactaaccctattcctatg----tgctggtgtataaacaaacaagctcat---tgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcag
               | ||||||||||   | || ||||| ||| |  |||| ||||||||||| ||||||||||||||||||||||           ||||| |||  |    |||||| |   | | |  ||| |  |||     ||| || || |     |  | ||| ||   ||     |||| || | | | ||||   |||||   | |                       
GAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGT---------TGAGCGATAGAGg--taagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactg--cactaatctgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15426921|gb|BI542743.1|BI542743
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG----A                         A-GAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: gi|5650248|gb|AI920608.1|AI920608
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA                         AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: gi|78021110|gb|DV489497.1|DV489497
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA                         AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: gi|76914763|gb|DV165676.1|DV165676
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA                         AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: gi|211335099|gb|FK972896.1|FK972896
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG----A                         A-GAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: gi|211409237|gb|FL441028.1|FL441028
EST:     AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-G----                         AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC