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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACGGGATGGAGGTGGAGGCTCTAGAGAAGGGGTACACAGCTTTTGCCAAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAGgttggtgtctgcaggcttctgcatacttcttattctctttttttttttgggttgttgttcagatggaactatgttcagaatgtgattaaggttttccagtcgcag

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76292499|gb|DV032067.1|DV032067
EST:     AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAG                         CTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
genomic: AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAGgttggtgtct ... ccagtcgcagCTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
EST: gi|148938780|gb|EC883115.2|EC883115
EST:     AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAG                         CTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
genomic: AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAGgttggtgtct ... ccagtcgcagCTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
EST: gi|71430898|gb|DR811948.1|DR811948
EST:     AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAG                         CTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
genomic: AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAGgttggtgtct ... ccagtcgcagCTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
EST: gi|71447120|gb|DR828170.1|DR828170
EST:     AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAG                         CTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC
genomic: AAGGCGGTGAAGTCTTTTACTTCTTCAGAACGGTACAAGCGATCAGAGAGgttggtgtct ... ccagtcgcagCTATTTTGAGGACATGTATGGTACAGATGCTTTGCGTTCTTCAGACAAGAC