Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGTCGGGGACGCACAGCGAAGGGCCATCCAGGCCGACGGCGCCACGCGCGTCGCGCTCGTTGACGAGCGCGACCGCCCCATCGCCGTCCTCAGCGAgtaagacaaccgattcccccttgctgcttgttttgtgggcttgtcctgtcgctggtcctatgcctgtatgtgcgttggtaactgaagatgatagaataga...

Basic information

species Zea mays
transcript GRMZM2G051270_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051270_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g53230.1 (Oryza sativa), 5'ss of exon 1
TCTCTGTCGGGGACGCACAGCGAAGGGCCATCCAGGCCGACGGCGCCACGCGCGTCGCGCTCGTTGACGAGCGCGACCGCCCCATCGCCGTCCTCAGCGAgtaagacaaccgatt--cccccttgctgcttgttttgtgggcttgtcctgtcgctggtcctatgcctgtatgtgcgttggtaactg--aagatgatagaataga
|| |  |||| ||||| |||||  | |||||| ||||   |||||||   |||||||||||||| ||||    |||||||||| |||||||||||||||||| ||||| ||      ||||    || |||||||     | ||     || ||   |||  ||     | |     | | || |     | |  ||| |    
TCCCCCTCGGTGACGCCCAGCGCCGCGCCATCGAGGCGTCCGGCGCCCGCCGCGTCGCGCTCGTCGACGCCGCCGACCGCCCCCTCGCCGTCCTCAGCGAgtgagacatcccccctaccccacctcttcttgtttcccttgtttagttagttgcatttccc-tgttcagacgcttaattgcaattatttggttactaggag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371619|gb|FL290738.1|FL290738
EST:     TGACGAGCGCGACCGCCCCATCGCCGTCCTCAGCGA                         CATTGAGATCTATAAGCATAATAAGGAAGAAAGGGTAGCACGGACATGGGG
genomic: TGACGAGCGCGACCGCCCCATCGCCGTCCTCAGCGAgtaagacaac ... tcttttgcagCATTGAGATCTATAAGCATAATAAGGAAGAAAGGGTAGCACGGACATGGGG
EST: gi|60350057|gb|DN217030.1|DN217030
EST:     CGTCCTCAGCGA                         CATTGAGATCTATAAGCATAATAAGGAAGAAAGGGTAGCACGGACATGGGG
genomic: CGTCCTCAGCGAgtaagacaac ... tcttttgcagCATTGAGATCTATAAGCATAATAAGGAAGAAAGGGTAGCACGGACATGGGG
EST: gi|211371620|gb|FL290739.1|FL290739
EST:     CGGCTGCGCTTGGGCCGCGTCGACAAGGAATGGGTCCACGTCCTCAGCGAAGGGTGGGCGAGCCCGCTGCAAGGGTTCATGCGCGAGCATGAGTTCCTCCAAGCACTTCATTTCAATGCCATCCGC
genomic: CGGCTGCGCTTGGGCCGCGTCGACAAGGAATGGGTCCACGTCCTCAGCGAAGGGTGGGCGAGCCCGCTGCAAGGGTTCATGCGCGAGCATGAGTTCCTCCAAGCACTTCATTTCAATGCCATCCGC