1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtgcttacttttgaggccctagtccgtccctgtcagccttgtaagtgtagtttcagacattggtacagtcagtctgtctaacatcttgtgaattgaag
species | Zea mays |
transcript | GRMZM2G051004_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC TGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGCEST: gi|31612121|gb|CD568743.1|CD568743
genomic: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtg ... tgaattgaagTGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGC
EST: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC TGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGCEST: gi|31664252|gb|CD572977.1|CD572977
genomic: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtg ... tgaattgaagTGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGC
EST: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGC TGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGCEST: gi|29946974|gb|CB816419.1|CB816419
genomic: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtg ... tgaattgaagTGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGC
EST: TCAGCCCATTTCGG-CGCG-CTTCCCCTCCGTCGCGG-CTCCTCTTTGGC TGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGC
genomic: TCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtg ... tgaattgaagTGCGAGGCACATCGAGCCGATGAGAGCGATAGCTACACAGGCGCCCCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCGTGCGTGAGGAGCACTGGTTCAGCCCATTTCGGCCGCGCCTTCCCCTCCGTCGCGGTCTCCTCTTTGGCgtaagtggtgcttacttttgaggccctagtccgtccctgtcagccttgtaagtgtagtttcagacattggtacagtcagtctgtctaacatcttgtgaattgaag
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