1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatcttgaaggcactactatctgtttctgtgattgttaattttagtaggatatagtctgaccacattgtattgttcatgctag
species | Zea mays |
transcript | GRMZM2G050961_T06 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTTEST: gi|211349701|gb|FL449949.1|FL449949
genomic: CTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTT
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGEST: gi|13198326|gb|BG354265.1|BG354265
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGEST: gi|19058136|gb|BM736803.1|BM736803
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: TGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGEST: gi|6342692|gb|AW165516.1|AW165516
genomic: TGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGEST: gi|166483222|gb|EG111081.1|EG111081
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: CCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATAGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGTEST: gi|13249748|gb|BG360653.1|BG360653
genomic: CCAAAATCTGCTGTTAAGTTTGAGAGATATCTGAT-GGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGGT
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCT-GGAA-AAGEST: gi|6431818|gb|AW172022.1|AW172022
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: AAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGNGAAGTTGAGGCTGGGAAGAAGEST: gi|211485848|gb|FK973440.1|FK973440
genomic: AAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
EST: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAG ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
genomic: TATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatctt ... ttcatgctagATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTGCTGGCGGTGTATTGCTACCAAAATCTGCTGTTAAGTTTGAGAGATATCTGATGGGTGAGgtgagatcttgaaggcactactatctgtttctgtgattgttaattttagtaggatatagtctgaccacattgtattgttcatgctag
- - - - - - - - - - - - - - - - GCTGTT