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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGCACGACAGCCGCTGCCGGGGCGGTACGCGCTGTACCACTTCGGCACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagctgctcttcttctcatctgttgcttgttattttgggtaatttgatattcttgaactgcctcgggtttcggttggggaaggacatcaaggaa...

Basic information

species Zea mays
transcript GRMZM2G050394_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050394_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g34870.1 (Oryza sativa), 5'ss of exon 1
---GGAGAAGCACGACAGCCGCTGCCGGGGCGGTACGCGCTGTACCACTTCGGCACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagctgctcttcttctcatctgttgcttgttattttgggtaatttgatattcttgaact-gcctcgggtttcggttggggaaggacatcaaggaa-
   |||  || |   ||||||  ||   |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||| ||||||||        ||  |  |       || ||  ||            | | | ||||||   | |  | ||| |     |||||||   |    ||||  
TCAGGAAGAGGAATGCAGCCGGGGC-ACGGCGG--CGCGCTGTACCACTTCGGCACCAGCGGCGCCGCCGTCGCCGCCGCCACTGCCGTCACGCACCCGCTCGgtcagtc--tcagtcagcccccacctactttctctttgcacgctactcctagttgttcttgtgttaggttggggatggaaatggggaaaccctaggaggagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445442|gb|DR826492.1|DR826492
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|37420634|gb|CF648012.1|CF648012
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|148953732|gb|EC899098.2|EC899098
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|50339444|gb|CO534570.1|CO534570
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|148942196|gb|EC887201.2|EC887201
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|33100951|gb|CF060911.1|CF060911
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
EST: gi|19822032|gb|BQ048056.1|BQ048056
EST:     CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCG                         ATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT
genomic: CACCAGCGGCGCCGCCGTCGCCGCCGCCACCGCCGTGACCCATCCGTTCGgtcagctagc ... cgtcctgcagATGTTATCAAAGTCAGGCTTCAAATGCAGCTTGCTGGGCAAAGAGGAAACT