1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCAGAAGAAAACGGTGAGGGACACAAAAAAGCCTGGAGAGACAATAATTAAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctcctgatatcatggtttcagtgacagtatgcattcttttttttcctgttcattgtttgttcagctattactgtcctagctactccctactga...
species | Zea mays |
transcript | GRMZM2G050309_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAEST: gi|211273945|gb|FL428383.1|FL428383
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGA
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTCEST: gi|211413826|gb|FL421635.1|FL421635
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTC
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTCEST: gi|211217873|gb|FL416206.1|FL416206
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTC
EST: --GG-ACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTEST: gi|211271473|gb|FL404041.1|FL404041
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATT
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGEST: gi|211297289|gb|FL430290.1|FL430290
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAG
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACCGTGAAGTTCGTGCTTEST: gi|211479928|gb|FL425096.1|FL425096
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAAC-GTGAAGTTCGTGCTT
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTEST: gi|211302843|gb|FL375574.1|FL375574
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAA-GATCACACCAATTCAAAAACGTGAAGTTCGTGCTT
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAEST: gi|211423500|gb|FL387496.1|FL387496
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAA
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGGGGAAGTTCGTGCTTEST: gi|211294138|gb|FL370587.1|FL370587
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTG-AAGTTCGTGCTT
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCEST: gi|211482742|gb|FL422868.1|FL422868
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGC
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAEST: gi|211169813|gb|FL415671.1|FL415671
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAA
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTCEST: gi|211311587|gb|FL416722.1|FL416722
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTTC
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGGTTGGAAAGATCACACCAATEST: gi|211479165|gb|FL394814.1|FL394814
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAG-TTGGAAAGATCACACCAAT
EST: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAG GTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTT
genomic: AAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctc ... ttgtacttagGTACACAGTTGGAAAGATCACACCAATTCAAAAACGTGAAGTTCGTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGAAGAAAACGGTGAGGGACACAAAAAAGCCTGGAGAGACAATAATTAAGGGACACAGAAGCTATGATTTAATGCTCAGCCTGCAGCTTGGAATCAGgtagcacctcctgatatcatggtttcagtgacagtatgcattcttttttttcctgttcattgtttgttcagctattactgtcctagctactccctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctac