Sequence
atgc intronic sequence ATGC exonic sequenceAGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaatatttgagtcatcctctttgatacaatatatagttgggtgttcgtgttctgtaatgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 5'ss of exon 2
AGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaata------tttgagtcatcctctttgatacaatatatagttgggtgtt-cgtgttctgtaatgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
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CGAAAATAGGGAGAGAGAAATCATGCGCTCAAGGAGGCACAAAATGGGTGTTGATGATTTTGAATTGCTTACCATTATTGGCAGAGGTGCATTTGGGGAGgtaagaagggcactgtttctactccctatattcgatgcag-atatagttgactgttgtgtcatgcgtaataaacatcagtttctgcagtaccttgagaaac-------------------------------------------------------------------------------------------
upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 3
AGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaatatttgagtcatcctctttgatacaatatatagttgggtgttcgtgttctgtaa---tgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
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TGAGAAAAAGGAAATGGAGTATATGCGTCTACAAAGACAGAAAATGGGGGTTGATGACTTTGAACTGCTTAGCATCATTGGCCGGGGTGCTTTCGGTGAGgta-tatctctttatgt-gttctttgtggttgcctctcttatttttcacttcctttttgtaagcttagctaatatcttgtctcatctttacatataaaattt--------------------------------------------------------------------------------------
upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 3
AGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaa-tatttgagtcatcctctttgatacaatatatagttgggtgttcgtgttctgtaatgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
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TGAGAGAAAGGAGACAGAGTATATGCGTATCCAAAGACATAAGATGGGTGTTGATGACTTTGAACTTTTGACCATTATAGGAAGAGGTGCCTTTGGAGAGgtttttatctacttaccttgtactattttatgttatgcaccttt---tcttaacattctcagttgagatgacatttgtctagt----ctaattttggggttgttgtg-------------------------------------------------------------------------------
upper sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S22_429V6.2 (Physcomitrella patens), 5'ss of exon 3
AGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaatatttgagtcatcctctttgatacaatatatagttgggtgttcgtgttctgtaatgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
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GGAGAGGAAAGAAACCGAGTACATGCGTTTGCAGCGTCATAAAATGGGAGTGGAAGATTTTGAATTGCTAACCATCATCGGGCGTGGCGCATTTGGGGAGgta-tgtgtcccaaatctgaaccttctgtt--catacat-------tactaatttactgaaatgcccctcaggattgtcagtattctatgtcgacaaaattctgcgtcat---------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76293758|gb|DV033326.1|DV033326EST: TTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAG GTGAGACTTTGTAGAGAAAAAGCTACATCCAATGTGTATGCAATGAAAAAG
genomic: TTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaata ... tattttgcagGTGAGACTTTGTAGAGAAAAAGCTACATCCAATGTGTATGCAATGAAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAAAAAAGGAGACAGAATACATGCGCCTACGAAGGCATAAAATGGGCGTTGATGACTTTGAATTGCTTACCATTATTGGGAGAGGTGCATTTGGGGAGgtaacaaatatttgagtcatcctctttgatacaatatatagttgggtgttcgtgttctgtaatgaacaacagtttactcaatacttcgagagaaagttttcttgtgaaatacatgcaggtctctaaagagacaatgtctgttttctgtgtctgcctgcagcttaccccattataatattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG