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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGGATGAAATAGCTGCAAAATTTTACAATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagccttatcttgtattgccatgattctgcatccttcagacaccatctggttttagcaatttttctagttggtgtgtgacaccaattaggcaacagta...

Basic information

species Zea mays
transcript GRMZM2G048804_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211094046|gb|FL457289.1|FL457289
EST:     GTATACAACGCCAGAACCCTTTAGAAGGACTTTTCAGCGAAATGTTCAAG                         ATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
genomic: ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagcctta ... cattctgcagATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
EST: gi|24769748|gb|CA404877.1|CA404877
EST:     ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAG                         ATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
genomic: ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagcctta ... cattctgcagATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
EST: gi|40335164|gb|CK369234.1|CK369234
EST:     CTTTAGAAGGCCTTTTCAGCGAAATGTTCAAG                         ATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
genomic: CTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagcctta ... cattctgcagATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
EST: gi|5895669|gb|AW036915.1|AW036915
EST:     ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAG                         ATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
genomic: ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagcctta ... cattctgcagATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
EST: gi|12968751|gb|BG265697.1|BG265697
EST:     ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAG                         ATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT
genomic: ATATACAACGCCAGAACCCTTTAGAAGGCCTTTTCAGCGAAATGTTCAAGgtaagcctta ... cattctgcagATATAATGCACGAGAAAAGAATTTTATGTCGATGCTTTCATCTAAACCATT