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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacctaatttcacgaattgcgaactacttcgtaccttttttttgtattttgcttttttttgcctgcattagtgttctgctctgatgtaagataa...

Basic information

species Zea mays
transcript GRMZM2G047894_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71428423|gb|DR809473.1|DR809473
EST:     CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211511662|gb|FL408088.1|FL408088
EST:     CAAGGTTTCCAGAATATACGGGGTGGTAGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211285033|gb|FK988595.1|FK988595
EST:     CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211199436|gb|FL401716.1|FL401716
EST:     CAAGGTTTCCAGAATATACGGGGTGGTAGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211223965|gb|FL409228.1|FL409228
EST:     CAAGGTTTCCAGAATATACGGGGTGGTAGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211348875|gb|FL413241.1|FL413241
EST:     CAAGGTTTCCAGAATATACGGGGTGGTAGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|78086850|gb|DV515243.1|DV515243
EST:     CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|211285032|gb|FK988594.1|FK988594
EST:     CAAGGTTTCCAGAATATACGGGGTGGTAGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
EST: gi|71325385|gb|DR799370.1|DR799370
EST:     CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTG                         GAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG
genomic: CAAGGTTTCCAGAATATACGGCGTGGTCGGCACCATAAGATTGCTCGCTGgtgagtcacc ... ttttcatcagGAAGCTATGTACTCGTTATCACTTCTCAGAAAGATGCTGGCTCTTATCTGG