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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTCATATCACTTGCTTATCCTCTgtaagtatcacctttgttgttaattgacagtctgtaggttttttcctcttgatactttgtgagcagtattgttatatttctaaccactttctgttttggcacctttgcag

Basic information

species Zea mays
transcript GRMZM2G047860_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371979|gb|FL186724.1|FL186724
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatca ... acctttgcagATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|32808662|gb|CD960896.1|CD960896
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatca ... acctttgcagATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA
EST: gi|211371978|gb|FL186723.1|FL186723
EST:     GCCACTCATATCACTTGCTTATCCTCT                         ATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA
genomic: GCCACTCATATCACTTGCTTATCCTCTgtaagtatca ... acctttgcagATATGCTTCTGTTAGAGCTATAGAGACAAAAAATCCTGTAGATGATCAGCA