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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCATTTTGTTTTCCTCAAAGTAATCCAAGGAAAGTTGTTTCCAGATGTCAACTGCAAAAGTGTTAGATCCTGCTTTTCAAGGGGCTGGCCAGAAAGTgtatcctttcacatgtttgtcacatgtctgattctcttttgagaaaccgatagattttttttttatttactcaagcttgcaaatttagaacatgtttataaatgtatatgtatcccttagcataatctag

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047310_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 2
--CTATCATTTTGTTTTCCTCAAAGTAATCCAAGGAAAG-TTGTTTCCAGATGTCAACTGCAAAAGTGTTAGATCCTGCTTTTCAAGGGGCTGGCCAGAAAGTgtatcctttcacatgtttgtcacatgtctgattctcttttgagaaaccgatagattttttttttatttactcaagcttgcaaatttagaacatgtttataaatgtatatgtatcccttagcataatctag
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TACATAAATTTTCCCTGACACACAGAAAAAGAGGATTTGACTGTTATACAATGTCAA---CAAAAGTGTTGGATCCTGCATTTCAAGGAGCTGGCCAGAAACCgtatcctttcagctacataactactttcccattagtgtttgatat-caaatgagcaatctaattatgttctt---cctgaatgtttggactgtttgagcttgtgaacct-taacttttgttattag----