1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGAGCTTCAGCAAGGTGAAGAAGTACGGGCTTACCATGCTGCTCACGCAGGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttcctcacaccactacctgaggccgatctctccttcctcgagtgctcgcgaatgtctctgaaaaactcactgtcgcag
species | Zea mays |
transcript | GRMZM2G047143_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|76019513|gb|DT946683.1|DT946683
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: CCTCCCAGCTTTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|31441067|gb|CD510498.1|CD510498
genomic: CCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|78078551|gb|DV506963.1|DV506963
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|60349178|gb|DN216151.1|DN216151
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|94475186|gb|EB704144.1|EB704144
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|101396573|gb|EB820212.1|EB820212
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|78023687|gb|DV492074.1|DV492074
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: CCTCACTTCCCAGCTTTCAG AATGGCTGGAGGCCGGGAAGTTGCAGCGGATCGTGCTGGTCATAATGAGCAEST: gi|211437588|gb|FL436643.1|FL436643
genomic: CCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGGATCGTGCTGGTCATAATGAGCAEST: gi|148946894|gb|EC892174.2|EC892174
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCAEST: gi|32912163|gb|CF016975.1|CF016975
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
EST: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAG AATGGCTGGAGGCCGGGAAGCTGCAGCGGATCGTGCTGGTCATAATGAGCA
genomic: GGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttc ... actgtcgcagAATGGCTGGAGGCCGGGAAGCTGCAGCGTATCGTGCTGGTCATAATGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGCTTCAGCAAGGTGAAGAAGTACGGGCTTACCATGCTGCTCACGCAGGACGAGGGCGTGAAGAACTTCATCGCCAGCCTCACCTCCCAGCTCTCAGgtcggttttcctcacaccactacctgaggccgatctctccttcctcgagtgctcgcgaatgtctctgaaaaactcactgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC