1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctaccgccgatttgttccctgaactaaacacttattcttcagaatcccctaacaacaccaacttctggcag
species | Zea mays |
transcript | GRMZM2G047055_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTTEST: gi|211074261|gb|FL177903.1|FL177903
genomic: CTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctacc ... cttctggcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTT
EST: CTGAGGATATCCAGCCCCTCGTCTGCKACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTTEST: gi|211270540|gb|FL358782.1|FL358782
genomic: CTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctacc ... cttctggcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTT
EST: CTGAGGATATMCAGCMCCTCGTCTGCGACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCCGGCGACGACGCEST: gi|211274215|gb|FL334361.1|FL334361
genomic: CTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctacc ... cttctggcagGCTGGGTTCGCCGGCGACGACGC
EST: CTGAGGATATCCAGCCCCTCGTCTGCNACAACGGAACTGGCATGGTCAAG GCTGGGTTCGCCGGCGACGACGCTCCGAGGG
genomic: CTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctacc ... cttctggcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAAATGGCTGACGCTGAGGATATCCAGCCCCTCGTCTGCGACAACGGAACTGGCATGGTCAAGgtaagctaccgccgatttgttccctgaactaaacacttattcttcagaatcccctaacaacaccaacttctggcag
- - - - - - - - - GAGGAT