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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCCTCGAGATGGAACTATTCAGTGTTTTATTAAGAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctattgttgtgtggactattggaattttcggtaaaagtctggcatctgtgtttagattcagaacttaaaaactctgtagaaagaatgcgagata...

Basic information

species Zea mays
transcript GRMZM2G046816_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046816_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g06420.2 (Oryza sativa), 5'ss of exon 3
CCTGGGCCTCGAGATGGAACTATTCAGTGTTTTATTAAGAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctattgttgtgtggactattggaattttcggtaaaagtctg-gcatctgtgtttagattcagaacttaaaaactctgtagaaagaatgcgagata
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CCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGgtatgttacttgttacatctcatat-gctttatgttgtatgcgcctatgtaccagagcccatatttgcttctgcataagaagattcatatgtagttgtata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76923650|gb|DV169591.1|DV169591
EST:     GAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTG                         CCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC
genomic: GAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctat ... gtttctgcagCCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC
EST: gi|31355846|gb|CD440203.1|CD440203
EST:     GAGGGATAAATCTACCCAACTCTACAGTCTGTACCTTAGTTTTAGCTCTG                         CCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC
genomic: GAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctat ... gtttctgcagCCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC
EST: gi|67042292|gb|CO468547.1|CO468547
EST:     GAGGGATATTTCTCCCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTG                         CCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC
genomic: GAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctat ... gtttctgcagCCGTGCCTGTCGAAAATGGCAAATTCCTTCTATCCGCAAAAAGGAACTGCC