1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGCCTCGGCCGTGGCCCGCGGCGGGGTCGCGGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATGgttagttattctaacgccgcattgaagcactctgtttcgttgctgggttggggcttgctggtatcgagggttctgctgaaaagtatgggtatggctgttg...
species | Zea mays |
transcript | GRMZM2G046748_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATG CCAAACAGGCTCCTAAGGATTTCEST: gi|211460301|gb|FL343033.1|FL343033
genomic: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATGgttagttatt ... tttcttgcagCCAAACAGGCTCCTAAGGATTTC
EST: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAATGATG CCAAACAGGCTCCTAAGGATTTCCTTCATATCAATGATTTTGACAAGGATAEST: gi|76021130|gb|DT948300.1|DT948300
genomic: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATGgttagttatt ... tttcttgcagCCAAACAGGCTCCTAAGGATTTCCTTCATATCAATGATTTTGACAAGGATA
EST: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATG CCAAACAGGCTCCTAAGGATTTCCCTTC-TATCAATGATTTTGACAAGGAT
genomic: GGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATGgttagttatt ... tttcttgcagCCAAACAGGCTCCTAAGGATTT-CCTTCATATCAATGATTTTGACAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCTCGGCCGTGGCCCGCGGCGGGGTCGCGGTCGCCGCCGTGTCCAGCCCCGCTGTGTCGGCCGTCGCGGGGAAGGATGgttagttattctaacgccgcattgaagcactctgtttcgttgctgggttggggcttgctggtatcgagggttctgctgaaaagtatgggtatggctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG