1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaacacttcttccctcatcaaggacatgctcccctcattttgctatcctttgtttcatagactatgatattgtcacctttgcattccctgattccctcatggcgtaagaatatcaaattgcactagtgctctgctctataagcgatttgctgttttgtatttcccttaccgtgtacactttcaaatgcag
species | Zea mays |
transcript | GRMZM2G046587_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGTEST: gi|211349013|gb|FL190902.1|FL190902
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGTEST: gi|211351406|gb|FL190903.1|FL190903
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: ATGTCCCAGAAACATGTTGCTGCTCACCCATGGCANTGATTTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGTEST: gi|9732830|gb|BE511582.1|BE511582
genomic: ATGTCCCAGAAACATGTTGCTGCTCACCCATGGCA-TGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: ATGA-TTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGTEST: gi|32851273|gb|CD990954.1|CD990954
genomic: ATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGTEST: gi|60354612|gb|DN221585.1|DN221585
genomic: CATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
EST: GGCATGATTTGGAGATAG GACCAGGGGCTCCTGAATTCTTCAATTGT
genomic: GGCATGATTTGGAGATAGgtactaaaca ... tcaaatgcagGACCAGGGGCTCCTGAATTCTTCAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCCAGAAACATGTTGCTGCTCACCCATGGCATGATTTGGAGATAGgtactaaacacttcttccctcatcaaggacatgctcccctcattttgctatcctttgtttcatagactatgatattgtcacctttgcattccctgattccctcatggcgtaagaatatcaaattgcactagtgctctgctctataagcgatttgctgttttgtatttcccttaccgtgtacactttcaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT