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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATTTTCCCCAGAAGAGGATTGCGAGGTTATAGAATCAGAGAAACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTGgtaatggcttttcactacttcaataacttaagaagtaaaaagggcaaagatagccctggtatcatacaccccacacacctagcccttacaatatagtctt...

Basic information

species Zea mays
transcript GRMZM2G045944_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045944_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g33076.1 (Oryza sativa), 5'ss of exon 2
AATATTTTCCCCAGAAGAGGATTGCGAGGTTATAGAATCAGAGAAACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTGgtaatggcttttcactacttcaataacttaagaagtaaaaagggcaaagatagccctggtatcatacaccccacacacctagcccttac--aatatagtctt
||||||||| || || || ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||| |||  ||| | || |  | |  |  ||        |||   |    | |||   || | ||    ||  | |   |     || | ||  | 
AATATTTTCTCCTGATGATGATTGTGAGGTGATAGAATCAGAGAAACACTCCCATGTTTTTTACCAAGCTGAAGCAGATATATGGATGGTTCTGgtaatggctgttc-ttacattaacagttcatcac-tatttgttataaaccaaattgttgtactctagagcctcttcaattgggtgtagttaaaaacagcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950825|gb|EC896437.2|EC896437
EST:     AACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTG                         GTTGTGGNNNNNNNCAAGGAAAATGAATTGACTTGGCGTTGTGGTGCACTA
genomic: AACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTGgtaatggctt ... gatattgtagGTTGTGGAAAAAAACAAGGAAAATGAATTGACTTGGCGTTGTGGTGCACTA
EST: gi|50333778|gb|CO528904.1|CO528904
EST:     AACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTG                         GTTGTGGNNNNNNNCAAGGAAAATGAATTGACTTGGCGTTGTGGTGCACTA
genomic: AACACTCCCATGTTTTTTACCAAGCCGAAACGGATATTTGGATGGTTCTGgtaatggctt ... gatattgtagGTTGTGGAAAAAAACAAGGAAAATGAATTGACTTGGCGTTGTGGTGCACTA