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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGCAGCCAAGGACAAGAAGATGGCGTCCGCGGAACAGCTGGTCCTGGAACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttccacagctgttatagctcccacccgtggctgatgattttctcatagtggtctctaagatatcagttggatttgtgtgtgaattatctcttgtt...

Basic information

species Zea mays
transcript GRMZM2G045331_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g52340.1 (Oryza sativa), 5'ss of exon 2
CCAGGCAGCCAAGGACAAGAAGATGGCGTCCGCGGAACAGCTGGTCCTGGAACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttccacag-ctgttatagctcccacccgtggctgat--gattttctcatagtggtctctaagatatcagttggatttgtgtgtgaattatctcttgtt
 ||| |||||||||| | |||||||||||| ||||| |||||||| || || ||||||||||| || || |||||||||||  | || |||||||| |||||      | |   ||  ||  | ||     | |  |  ||  |     ||  | ||  | | |   ||      ||  | || | |    ||    |||   
GCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCGAAGgtccagcgcgcgttcttctagggttctatagcctaccctatctggggcactggtggtaatttgtggaattcacactgcctgtgggggaaggtttcgcctt---

upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g37790.1 (Oryza sativa), 5'ss of exon 2
CCAGGCAGCCAAGGACAAGAAGATGGCGTCCGCGGAACAGCTGGTCCTGGAACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttccacag-ctgttatagctcccacccgtggctgat--gattttctcatagtggtctctaagatatcagttggatttgtgtgtgaattatctcttgtt
 ||| |||||||||| | |||||||||||| ||||| |||||||| || || ||||||||||| || || |||||||||||  | || |||||||| |||||      | |   ||  ||  | ||     | |  |  ||  |     ||  | ||  | | |   ||      ||  | || | |    ||    |||   
GCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGgtccagcgcgcgttcttctagggttctatagcctaccctatctggggcactggtggtaatttgtggaattcacactgcctgtgggggaaggtttcgcctt---

upper sequence: GRMZM2G045331_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 1
CCAGGCAGCCAAGGACAAGAAGATGGCGTCCGCGGAACAGCTGGTCCTGGAACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttccacagctgttatagctcccacccgtggctgatgattttctcatagtggtctctaagatatcagttggatttgtgtgtgaattatctcttgtt--
|   || | ||||||   |||||||||||||||||| ||||| || || |||||| || |||||||||| || || |||||  | || || |||||||||||     | | |    |      |   ||  |    |     |||   | |  |  | ||   | | | | ||   ||||  ||||||||     |||    
CGGCGCTGGCAAGGATCGGAAGATGGCGTCCGCGGAGCAGCTCGTGCTCGAACTCAGCAACCCTGAACTCCGTGAAAACGCGCTTCTCGAACTCTCCAAGgtaaacccta-ataaatagccctttttacttgctctttcgagtttctgcttcattttttcctcg-tttgaattatttttgaatgtgaattgaagattggagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78123053|gb|DV541437.1|DV541437
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|76281973|gb|DV021541.1|DV021541
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|78088708|gb|DV517101.1|DV517101
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|60350887|gb|DN217860.1|DN217860
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|149048884|gb|EE048384.2|EE048384
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|31351237|gb|CD435594.1|CD435594
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|78091209|gb|DV519583.1|DV519583
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|211374626|gb|FK958606.1|FK958606
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|9731640|gb|BE510392.1|BE510392
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|71445883|gb|DR826933.1|DR826933
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|211374623|gb|FK958603.1|FK958603
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|31356490|gb|CD440847.1|CD440847
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGTANNNNNNNGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|211374624|gb|FK958604.1|FK958604
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|76936740|gb|DV174858.1|DV174858
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|31354815|gb|CD439172.1|CD439172
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|211371968|gb|FK958598.1|FK958598
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCATTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|74233595|gb|DT641509.1|DT641509
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
EST: gi|91056772|gb|EB167190.1|EB167190
EST:     AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAG                         AAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC
genomic: AACTCTGCGACCCTGAACTGCGCGAGAACGCTTTACTTGAGCTCTCCAAGgttgcttcca ... attttttcagAAAAGGGAGATTTTTCAAGATCTTGCTCCGCTGCTTTGGCACTCATTTGGC