1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CACAAGGACGGGGAAGGGGGAGACGCTGTGACGGGCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctaccacttctctcgctgtctgtcctgcctctgcctgtcgtgccgttgcgtgcgtcaatgctgctgcgcgcggctattgcgcttcaactggttcc...
species | Zea mays |
transcript | GRMZM2G045330_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211467507|gb|FL214416.1|FL214416
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG AACATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464982|gb|FL214406.1|FL214406
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|31911111|gb|CD651762.1|CD651762
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: CCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464984|gb|FL214408.1|FL214408
genomic: CCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211462452|gb|FL214394.1|FL214394
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|148971177|gb|EE022031.2|EE022031
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211462450|gb|FL214392.1|FL214392
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464973|gb|FL214397.1|FL214397
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464986|gb|FL214410.1|FL214410
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464978|gb|FL214402.1|FL214402
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGN ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|148936144|gb|EC880210.2|EC880210
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464987|gb|FL214411.1|FL214411
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|148969547|gb|EE020375.2|EE020375
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211462449|gb|FL214391.1|FL214391
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|71433254|gb|DR814304.1|DR814304
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464979|gb|FL214403.1|FL214403
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211462451|gb|FL214393.1|FL214393
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211467508|gb|FL214417.1|FL214417
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211462444|gb|FL214386.1|FL214386
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211467504|gb|FL214413.1|FL214413
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGT ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|148962923|gb|EE013859.2|EE013859
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCAEST: gi|149103190|gb|EE288562.2|EE288562
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCA
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|31910837|gb|CD651623.1|CD651623
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCEST: gi|211464985|gb|FL214409.1|FL214409
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
EST: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGG ACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
genomic: GCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctacc ... ttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAGGACGGGGAAGGGGGAGACGCTGTGACGGGCCATATCATCTCCACCACCATCGGCGGGAAGAACGGCGAGCCCAAGCGGgtaagctaccacttctctcgctgtctgtcctgcctctgcctgtcgtgccgttgcgtgcgtcaatgctgctgcgcgcggctattgcgcttcaactggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC