Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacattggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G045241_T07
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 6
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacattggaattat--cttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag
|||||| | |||  ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| || |||||  | |||||||||| |   | | |   |||||   ||| | ||||    | ||| | |  |    ||  |||||||  || |  |||   | | |    
GCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgta-tacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttag--

upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacatt--ggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag-----------------------------------------------
 |  |  | ||    || ||| ||| |||||||   ||  | |||||||| |||||| | |||||||| ||||| |||||||| || || ||||||||||||| ||    |   |  ||  | |||  | | || |    ||| |  ||  |  ||  | ||| |  | ||       | ||||| ||                                               
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgta-tgaagttgacttctacaaaattatgcacttgtgcagtctatgatttgg--aattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag