1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CTGAGTTTTGAAGGTGGCGAGGGATCTTTGCTGCGGGGTTCTATTTGTTCTCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttcttacag
species | Zea mays |
transcript | GRMZM2G045241_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATEST: gi|211081027|gb|FL228331.1|FL228331
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
EST: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGEST: gi|211081029|gb|FL228333.1|FL228333
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGG
EST: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATEST: gi|211081028|gb|FL228332.1|FL228332
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
EST: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATEST: gi|78081456|gb|DV509868.1|DV509868
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
EST: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATEST: gi|166421745|gb|EG232073.1|EG232073
genomic: TCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGAT
EST: CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAG GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
genomic: CAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagta ... tttcttacagGTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGTTTTGAAGGTGGCGAGGGATCTTTGCTGCGGGGTTCTATTTGTTCTCAGTGATTTTTGGCAAACACTCTTTGGTTAGATTAAGAATCATGGAAAGgtaagtagtaagtgctcttttcactttttactttagatggtctggaaggttaatttgacctttacttcctatttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA