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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTGGAATCAACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaatagtttattatacacttgaccttttttttttcttgtgctctgctagttttatcaacatgagttaatgttccaattgaacatgtgtggctcaatgtacag

Basic information

species Zea mays
transcript GRMZM2G044317_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 18
CACATTAACCTTTGAGGCCACACACGGTGTCTCCTGTGATTCTGGAATCAACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagt-gcaatagtttattatacacttgaccttttttttttcttgtgctctgctagttttatcaacatgagttaatgttccaattga--acatgtgtggctcaatgtacag
|||  | || ||||||||   ||| |||||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||||  ||  ||| || ||| ||  | |||||| ||| | || |                ||||||        |||| ||| |||  |   |||||| ||||||    |  |  |  | | |  ||||
CACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcaccatagttgatt-tgcattca-------------tttgtgc-------attttgtcagcatatga-gatgttcaaattgacagtaatttcgttttattccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32164923|gb|CD670241.1|CD670241
EST:     TTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: TTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|211298656|gb|FL153827.1|FL153827
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|60351451|gb|DN218424.1|DN218424
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|18383633|gb|BM416833.1|BM416833
EST:     TTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         ANCCAANCAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: TTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|32164924|gb|CD670242.1|CD670242
EST:     CCATCCAAATCAATATTTCANG-GAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: CCATCCAAATCAATATTTCA-GTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|74238130|gb|DT646044.1|DT646044
EST:     CCCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|60354600|gb|DN221573.1|DN221573
EST:     AAATCAATATTTCAGTGAAAGCCAGAAAGTTTTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: AAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|78021198|gb|DV489585.1|DV489585
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|32832353|gb|CD972031.1|CD972031
EST:     ACCATCCAAATCAATATTTCAGCGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|32833600|gb|CD973278.1|CD973278
EST:     ACCATCCAAATCAATATTTCAGCGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|32834800|gb|CD974478.1|CD974478
EST:     ACCATCCAAATCAATATTTCAGCGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|78088857|gb|DV517250.1|DV517250
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
EST: gi|211096944|gb|FL476439.1|FL476439
EST:     ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAA                         AACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA
genomic: ACCATCCAAATCAATATTTCAGTGAAAGCCAGAAAGTTCTGCGAGCCAAAgtgagtgcaa ... caatgtacagAACCAAACAATGGAGAGCCAATCGCAATCAGCAACCTAAATTGTGTCAGCA