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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctccggtttcctattagttgtcgttttggataaggttcgagtcaaacttataaaattttggctacaaataactattttgttatttaattttag...

Basic information

species Zea mays
transcript GRMZM2G044237_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 2
AAGGGGTTCAAGGCGGCGGGTATCTACAGTGGGTTGCGTGCCAAAGGCGAGAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctccggtttcctattagttgtcgttttggataaggttcgagtcaaacttataaaattttggctacaaataactattttgttatttaattttag
||||||||||||||||||||||||||| | ||  |||| ||||| ||||||||||| ||| | || ||||||||||||||||||||||||||||| || ||||    ||        |  ||  |  ||  ||        ||   ||       |  | | ||  | || ||  |     | | ||||     | | ||
AAGGGGTTCAAGGCGGCGGGTATCTACGGCGGTCTGCGCGCCAAGGGCGAGAAGCCCGACCTTGCGCTGGTCGCCTGCGACGTCGACGCCACTGTCGCGGgtaaaggctatcaccaacactttctattcagttcactcgtagtagcagaagtttcttcagagttcagacttcagtttcacttctcgttaccatttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89755796|gb|DY686083.1|DY686083
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|71298836|gb|DR785405.1|DR785405
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149095151|gb|EE180766.2|EE180766
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|148956344|gb|EC902151.2|EC902151
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|148938791|gb|EC883128.2|EC883128
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|78092275|gb|DV520649.1|DV520649
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149000193|gb|EE037335.2|EE037335
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149009106|gb|EE041258.2|EE041258
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCCACGTCCACGCCACTGTACCAC                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|148932140|gb|EC875563.2|EC875563
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|211453339|gb|FL002421.1|FL002421
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|28873422|gb|CB329414.1|CB329414
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149071265|gb|EE159660.2|EE159660
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|71446471|gb|DR827521.1|DR827521
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|74242073|gb|DT649987.1|DT649987
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|148930889|gb|EC873334.2|EC873334
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|148972816|gb|EE023801.2|EE023801
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149110343|gb|EE190365.2|EE190365
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|20301290|gb|BQ164233.1|BQ164233
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
EST: gi|149084216|gb|EE173633.2|EE173633
EST:     GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCCACGCCACTGTAGCAG                         GAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC
genomic: GAAGCCTGACTTGGCACTGGTCGCCTGCGACGTCGACGCCACTGTAGCAGgtactccctc ... cccatttcagGAGCATTTACAACAAACGTCGTAGCCGCCGCACCTGTTTTGTATTGCAAGC