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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga...

Basic information

species Zea mays
transcript GRMZM2G044137_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g41110.2 (Oryza sativa), 5'ss of exon 2
AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaa-gcgttgccctttcctttccctctgataga-atcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
||||| || | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||      |||| |   |  |||  |  ||   |     |  | ||  | || |||  ||     |   ||       || ||||| |   | 
AGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgatcccgaccgattttttgttgttttgttcgatctggtagtgttagtggatgttgattga--ttagtttgctcgcttaatccgaattgtagggtagg

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0064g00850.t01 (Vitis vinifera), 5'ss of exon 2
AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttcttt--ttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga-----------------
|    ||| | |||||||||||||||    || ||||||||||||||||||||||| || |||||||||||||| |||||||  ||  | | |||||||||| |    | ||||| |||  |  |||| | | |   |   ||  | |||   |   | |  ||   ||| |   | ||    |  |  |  ||    |  |                 
ACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttatacatttttttcatattaagagctacagatcttttctcttcttgcatttttgg-tgtgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcag

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EDP06387 (Chlamydomonas reinhardtii), 5'ss of exon 2
AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgta---tcgattccatttct---ttttctaagcgttgccctttcctttccctctgatagaatcgaatgacat---tgagccgtatgcccgtatg--gatttgtacgagtga---------------------------------------------------
| |   |||| |||||||  |   |||  ||||||||||||||| ||||||||||| |||||||||||||||  ||| ||||| ||||||     ||||||||   | |    |    |        |  |  | |||    ||    | | |     |   |   || | |   || | |  |   ||| | |  |  || | |    ||                                                   
ACCCAGGAGAACATCAACGCCCGTCTGGCGCTGGTGATGAAGAGTGGCAAGTACACTCTGGGCTACAAGACCTGCCTGAAGACCCTGCGCTCGGGCAAGGgtaagtttgcgctcgcgccgacgcccgccgactggtgcttcctcaacccgcaccccctgccccttgtgccctgtgtggggctcagcaccgcacgctgccttctccaccagaaaactgcacatctatctcaccaactttgtctcctcttcttgcccaccgcag

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ14031 (Selaginella moellendorffii), 5'ss of exon 1
AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
| |   ||||||||||||||||   ||  ||||||||||||||||||||||||||| |||||||||||||| || |||||  |||||||||     || ||| |  | ||| | | | |||||     ||||  ||          |  || |  |     |                                      
ACCCAGGAGAGCATCAACAACAGATTGGCGCTGGTGATGAAGAGCGGCAAGTACACGCTGGGCTACAAGACGGTGCTCAAATCGCTGCGCAGTGGAAAAGgtgtgaaatccctctttgtttctc----ttgcgattgatccattggcgcattgggtgcgcag--------------------------------------

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ13021 (Selaginella moellendorffii), 5'ss of exon 1
AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
| |   ||||||||||||||||   ||  ||||||||||||||||||||||||||| ||||| |||||||| || |||||  ||||||| |     || ||| |   |   ||  || ||| |     ||||  ||          |  || |  |     |                                      
ACCCAGGAGAGCATCAACAACAGATTGGCGCTGGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAGACGGTGCTCAAATCGCTGCGGAGTGGAAAAGgtgt--gtgaaatccctctttgtttctcttgcgattgatccagtggcgcattgggtgcgcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149089950|gb|EE179239.2|EE179239
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|211067927|gb|FL140853.1|FL140853
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60355557|gb|DN222530.1|DN222530
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60394375|gb|DN227245.1|DN227245
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|9824981|gb|BE575183.1|BE575183
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60338522|gb|DN205495.1|DN205495
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|15100298|gb|BI396089.1|BI396089
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|89251915|gb|DY623701.1|DY623701
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|31406277|gb|CD485009.1|CD485009
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|31441073|gb|CD510504.1|CD510504
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|211067924|gb|FL140850.1|FL140850
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60347030|gb|DN214003.1|DN214003
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|211104174|gb|FL470700.1|FL470700
EST:     GTACACCTTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|67023955|gb|CO452704.1|CO452704
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60341097|gb|DN208070.1|DN208070
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|27575973|gb|CA998667.1|CA998667
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|76013092|gb|DT940262.1|DT940262
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|211065202|gb|FL140848.1|FL140848
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|211065201|gb|FL140847.1|FL140847
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|60357629|gb|DN224602.1|DN224602
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
EST: gi|71299866|gb|DR785955.1|DR785955
EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTTTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA