ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga...

Basic information

species	Zea mays
transcript	GRMZM2G044137_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g41110.2 (Oryza sativa), 5'ss of exon 2

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaa-gcgttgccctttcctttccctctgataga-atcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
||||| || | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||      |||| |   |  |||  |  ||   |     |  | ||  | || |||  ||     |   ||       || ||||| |   | 
AGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgatcccgaccgattttttgttgttttgttcgatctggtagtgttagtggatgttgattga--ttagtttgctcgcttaatccgaattgtagggtagg

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0064g00850.t01 (Vitis vinifera), 5'ss of exon 2

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttcttt--ttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga-----------------
|    ||| | |||||||||||||||    || ||||||||||||||||||||||| || |||||||||||||| |||||||  ||  | | |||||||||| |    | ||||| |||  |  |||| | | |   |   ||  | |||   |   | |  ||   ||| |   | ||    |  |  |  ||    |  |                 
ACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttatacatttttttcatattaagagctacagatcttttctcttcttgcatttttgg-tgtgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcag

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EDP06387 (Chlamydomonas reinhardtii), 5'ss of exon 2

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgta---tcgattccatttct---ttttctaagcgttgccctttcctttccctctgatagaatcgaatgacat---tgagccgtatgcccgtatg--gatttgtacgagtga---------------------------------------------------
| |   |||| |||||||  |   |||  ||||||||||||||| ||||||||||| |||||||||||||||  ||| ||||| ||||||     ||||||||   | |    |    |        |  |  | |||    ||    | | |     |   |   || | |   || | |  |   ||| | |  |  || | |    ||                                                   
ACCCAGGAGAACATCAACGCCCGTCTGGCGCTGGTGATGAAGAGTGGCAAGTACACTCTGGGCTACAAGACCTGCCTGAAGACCCTGCGCTCGGGCAAGGgtaagtttgcgctcgcgccgacgcccgccgactggtgcttcctcaacccgcaccccctgccccttgtgccctgtgtggggctcagcaccgcacgctgccttctccaccagaaaactgcacatctatctcaccaactttgtctcctcttcttgcccaccgcag

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ14031 (Selaginella moellendorffii), 5'ss of exon 1

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
| |   ||||||||||||||||   ||  ||||||||||||||||||||||||||| |||||||||||||| || |||||  |||||||||     || ||| |  | ||| | | | |||||     ||||  ||          |  || |  |     |                                      
ACCCAGGAGAGCATCAACAACAGATTGGCGCTGGTGATGAAGAGCGGCAAGTACACGCTGGGCTACAAGACGGTGCTCAAATCGCTGCGCAGTGGAAAAGgtgtgaaatccctctttgtttctc----ttgcgattgatccattggcgcattgggtgcgcag--------------------------------------

upper sequence: GRMZM2G044137_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ13021 (Selaginella moellendorffii), 5'ss of exon 1

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattccatttctttttctaagcgttgccctttcctttccctctgatagaatcgaatgacattgagccgtatgcccgtatggatttgtacgagtga
| |   ||||||||||||||||   ||  ||||||||||||||||||||||||||| ||||| |||||||| || |||||  ||||||| |     || ||| |   |   ||  || ||| |     ||||  ||          |  || |  |     |                                      
ACCCAGGAGAGCATCAACAACAGATTGGCGCTGGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAGACGGTGCTCAAATCGCTGCGGAGTGGAAAAGgtgt--gtgaaatccctctttgtttctcttgcgattgatccagtggcgcattgggtgcgcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|76013092|gb|DT940262.1|DT940262

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|211065202|gb|FL140848.1|FL140848

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|31406277|gb|CD485009.1|CD485009

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|91049094|gb|EB159512.1|EB159512

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60394375|gb|DN227245.1|DN227245

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60355557|gb|DN222530.1|DN222530

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|211067927|gb|FL140853.1|FL140853

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|67023955|gb|CO452704.1|CO452704

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|149089950|gb|EE179239.2|EE179239

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|32914523|gb|CF019335.1|CF019335

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|32865422|gb|CF005104.1|CF005104

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60338522|gb|DN205495.1|DN205495

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|15100298|gb|BI396089.1|BI396089

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|9824981|gb|BE575183.1|BE575183

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|211067924|gb|FL140850.1|FL140850

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|89251915|gb|DY623701.1|DY623701

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|27575973|gb|CA998667.1|CA998667

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|31441073|gb|CD510504.1|CD510504

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60357629|gb|DN224602.1|DN224602

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|211065201|gb|FL140847.1|FL140847

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|71299866|gb|DR785955.1|DR785955

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTTTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60341097|gb|DN208070.1|DN208070

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

EST: gi|60347030|gb|DN214003.1|DN214003

EST:     GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGG                         GAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA
genomic: GTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2161

AGCACAGAGAGCATCAACAACAAGCTGCAGCTGGTGATGAAGAGCGGCAAGTACACCCTGGGCTACAAGACCGTCCTCAAGACGCTGCGCAACTCCAAGGgtatcgattc ... ctctgttcagGAAAGCTGATCATCATCGCAAACAACTGCCCTCCACTTAGGAAGTCTGAGATTGAGTACTACGCCATGCTGGCCAAAGTTAGTGTGCACCATTTCCACGG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1827

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1339