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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgcgatctatctcaacgctggatctctgtttcacttgccgcgagccatgtatggttcagggcctgctcgcgtgttccggatcctgattaccggtgccaaattgctgcttgatccag

Basic information

species Zea mays
transcript GRMZM2G044027_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 2
CGCGATGGCGCAGAAGGAGACCAATGGCAGCAACGGCGAGCACATCTCCACCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgcgatctatctcaacgctggatctctgtttcacttgccgcgagccatgtatggttcagggcctgctcgcgtgttccggatcctgattaccggtgccaaattgctgcttgatccag
|| |||||||||||||||| |||||||||||| |  || | |   | ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |    ||     |||  | |||||||||||                 ||| | || |      |||| | ||||  |  | ||   ||||||    |||     |||    |   | |||
CGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtgattttgccggg-atccgatcgctggatctc-----------------gccgtatacgt-----ggcccgatcgctcgacctgg--tctgattgttcgtgggtgtttgtgtgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6637013|gb|AW261285.1|AW261285
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|149097834|gb|EE183762.2|EE183762
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     CCCGCCCGGCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCTCTA
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGC-A
EST: gi|60672298|gb|DN475062.1|DN475062
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|40334152|gb|CK368222.1|CK368222
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTTCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|22473192|gb|BU037672.1|BU037672
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|26558105|gb|CA830340.1|CA830340
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGGTCTTCCAG                         GGTAAACCCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCT-AA-CCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGC
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCGTCGCCCCTCCGCTTCTCCAAGTTCTTCCAGgtcacagcgc ... cttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC