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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcattttttatgcgtgcaacttggttcagatcttgtgccgtttcgccatgaggtactcctcgctgactagtgcccctggtggatgtgaaaagcc...

Basic information

species Zea mays
transcript GRMZM2G044011_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g56480.3 (Oryza sativa), 5'ss of exon 2
-----TTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcattttttatgcgtgcaacttggttcagatcttgtgccgtt--tcgccatgaggtactcctcgctgactagtgcccctggtggatgtgaaaagcc--
      ||||||||||||||||||||||| ||||||| || |||||||| ||||     || || | ||||||| ||||||| ||  ||||||| | |   || |  ||     ||| |  ||   | || | |||  |  ||| |||  | |  |  | |  |||      ||   | ||| ||   |   
CGCAGCTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcctccgttttatgtagtgattg-tgtagtgttggttcagttagtaacca-gagtaatttatttcggtttagcaattttga--gctgttaatttcgaa

upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g56480.2 (Oryza sativa), 5'ss of exon 2
TTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcattttttatgcgtgcaacttggttcagatcttgtgccgtt--tcgccatgaggtactcctcgctgactagtgcccctggtggatgtgaaaagcc--
 ||||||||||||||||||||||| ||||||| || |||||||| ||||     || || | ||||||| ||||||| ||  ||||||| | |   || |  ||     ||| |  ||   | || | |||  |  ||| |||  | |  |  | |  |||      ||   | ||| ||   |   
CTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcctccgttttatgtagtgattg-tgtagtgttggttcagttagtaacca-gagtaatttatttcggtttagcaattttga--gctgttaatttcgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351008|gb|BM895540.1|BM895540
EST:     GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG                         GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: gi|19351610|gb|BM896142.1|BM896142
EST:     GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG                         GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: gi|89251335|gb|DY623121.1|DY623121
EST:     GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG                         GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
EST: gi|22491504|gb|BU051427.1|BU051427
EST:     GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACG                         GAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA
genomic: GCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcat ... ctggttccagGAAAGTGCTGAGAGAGGTGGCATCTGGAGGACGTGATGCCGAGCGTGTGAA