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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttggagaaagaaattcacttcatcttgctgaattacatgacaatgctaataacattctaacttagctcttgatttggtgccctttag

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211388201|gb|FL200487.1|FL200487
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388200|gb|FL200486.1|FL200486
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|71434429|gb|DR815479.1|DR815479
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|6021078|gb|AW066006.1|AW066006
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211390827|gb|FL200489.1|FL200489
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211385567|gb|FL200472.1|FL200472
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388193|gb|FL200479.1|FL200479
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|6021040|gb|AW065968.1|AW065968
EST:     GCCACATAATACCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388189|gb|FL200475.1|FL200475
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388188|gb|FL200474.1|FL200474
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211390829|gb|FL200491.1|FL200491
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388198|gb|FL200484.1|FL200484
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388194|gb|FL200480.1|FL200480
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCYATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388199|gb|FL200485.1|FL200485
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
EST: gi|211388202|gb|FL200488.1|FL200488
EST:     GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGG                         ACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT
genomic: GCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttg ... tgccctttagACCATCAGCTATATGGCTGAGCGAGTTGTTGGAACTGGATCGTTTGGGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGTCGCCACTATTATTGCGGGGGGAAGTGATGCAGTGACAGGCCACATAATATCGACTACGATTGGGGGAAAGAATGGTGAACCAAAGAGGgtaggttttggagaaagaaattcacttcatcttgctgaattacatgacaatgctaataacattctaacttagctcttgatttggtgccctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG