1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACTGATCTAGCACACAGGCATGACATTTATGTGAGCACAGGTGATTGGGCAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcctctgttatggttatttaattctgtgacagattgaaaacatgtgtgaaatcacttccagagcagcacataacatgtgtattccatttcag
species | Zea mays |
transcript | GRMZM2G043147_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTCEST: gi|76283900|gb|DV023468.1|DV023468
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
EST: CAGAGCATTTGCTGCGTCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTCEST: gi|32935090|gb|CF039902.1|CF039902
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
EST: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTCEST: gi|67037884|gb|CO464448.1|CO464448
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
EST: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTCEST: gi|67025517|gb|CO454266.1|CO454266
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
EST: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTCEST: gi|67024501|gb|CO453250.1|CO453250
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
EST: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAG GAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
genomic: CAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcct ... tccatttcagGAATGCAAGGCCTTAGGGTTTGACACAATTGAGCTGAATGCTGGGTCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGATCTAGCACACAGGCATGACATTTATGTGAGCACAGGTGATTGGGCAGAGCATTTGCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGgtatgcgcctctgttatggttatttaattctgtgacagattgaaaacatgtgtgaaatcacttccagagcagcacataacatgtgtattccatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA