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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGTCTGGCGTCCGCTGCAGTTCTATAGGCGTCTTCCTGACGCCATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcgatcctgacgcccagcacctgcatcataaatcatgatctcatgccttcagagtgaattttattgccactgataaggctggaaaatttcatat...

Basic information

species Zea mays
transcript GRMZM2G042881_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93011661|gb|EB637181.1|EB637181
EST:     CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAG                         GTTTTTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
genomic: CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcga ... atacttgcagGTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
EST: gi|71330250|gb|DR801871.1|DR801871
EST:     CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAG                         GTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
genomic: CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcga ... atacttgcagGTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
EST: gi|71322065|gb|DR797721.1|DR797721
EST:     CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAG                         GTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
genomic: CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcga ... atacttgcagGTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
EST: gi|76291966|gb|DV031534.1|DV031534
EST:     CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGGTGCATCCCGAG                         GTTTCTTCGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
genomic: CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcga ... atacttgcagGTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
EST: gi|71299618|gb|DR785819.1|DR785819
EST:     CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAG                         GTTTTTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT
genomic: CATTTCATGCCTAGGCAACACCTAATCATATAGGGCGGATGCATCCCGAGgttgtggcga ... atacttgcagGTTTCTACGAGACTCGAGTTGCTTACTATTCATGGCGGGGAGCACCAGGGT