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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaag

Basic information

species Zea mays
transcript GRMZM2G042552_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042552_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01810.1 (Oryza sativa), 5'ss of exon 2
ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcacccatctcgaatcaatctgttgacggacgatctgttggtttcacttttcaccgaccccttgtttgtctggtgatgccttcttcaag
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||  |   |   || |  || ||  ||      ||||        ||  |  ||  | ||  |    || ||   ||   |  ||  |||  
ATGTGCAGAGGGAGGAGAAGAAGGTGGAGAAGTCCATCAGGGAGGCCGCCAAGCGCAACGACATCGGATCGGCCAAGgtacccctacgcttccatccattcgatt------cgattccacttgtttgcggtttgctgatgcgc-attcgt---gttgggttttggtcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154541|gb|DY399330.1|DY399330
EST:     AGAAGGCCATCTGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCATGGAGGTGGTGCGCTCGAGGA
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGA
EST: gi|76931381|gb|DV172714.1|DV172714
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|76293382|gb|DV032950.1|DV032950
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|149039515|gb|EE046658.2|EE046658
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|211061419|gb|FL334691.1|FL334691
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCAAGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|211354155|gb|FL091860.1|FL091860
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCAAGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|32804763|gb|CD956999.1|CD956999
EST:     GATCCGCCAAG                         GCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
genomic: GATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGGTGCGCTCGAGGAAGGCAGTCAACCGCCTGTAC
EST: gi|166458771|gb|EG039295.1|EG039295
EST:     AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAG                         GCGCTGGCCAAGGAGGTGG
genomic: AGAAGGCCATCAGGGAGGCCGCCAAGCGCAACGACATGGGATCCGCCAAGgtaggcaccc ... cttcttcaagGCGCTGGCCATGGAGGTGG