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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGTTCCGCTCTCCCTTTTCTGCTGCGACGACGGCTGGTCGAGCGCCGCCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccgacgcttatcttaccttcctgctgcgcaaaccctaagtaataatttgtattgcatctgacacaattagtgtaaatatggtattagtaacttcatttttttgttaaaaaatatcggctgcattgcttgctactgaag

Basic information

species Zea mays
transcript GRMZM2G042027_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371111|gb|FL037583.1|FL037583
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG                         TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|211373757|gb|FL037585.1|FL037585
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG                         TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|50325364|gb|CO520490.1|CO520490
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG                         TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|211373758|gb|FL037586.1|FL037586
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG                         TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|71436673|gb|DR817723.1|DR817723
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C--                         -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|71302083|gb|DR787129.1|DR787129
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C--                         -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|91054196|gb|EB164614.1|EB164614
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C--                         -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|211371112|gb|FL037584.1|FL037584
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C--                         -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|78083391|gb|DV511784.1|DV511784
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCA-C--                         -CAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
EST: gi|60342707|gb|DN209680.1|DN209680
EST:     CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAG                         TCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT
genomic: CCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccga ... gctactgaagTCAGACATGGGACAAGGTGGACAAGAGAAGTCGTTCAATTTCCTTCAAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCGTTCCGCTCTCCCTTTTCTGCTGCGACGACGGCTGGTCGAGCGCCGCCACACTTTGCAGCTTCCTTGGCTCTTCGCAGGTGACGAGCGCCCACCAGgtatgcccgacgcttatcttaccttcctgctgcgcaaaccctaagtaataatttgtattgcatctgacacaattagtgtaaatatggtattagtaacttcatttttttgttaaaaaatatcggctgcattgcttgctactgaag

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