Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGGGAGCTGGCTGGGCTGGCCGTGGGCGCAACCATCCTGCTTAACGTGCTCATTGCCGGgtgagtacttacgatatatatacttactcttcgtgacgtgctcattgcctggaatatacatattttgtacaaaatttaagtagtacaaattataataagt...

Basic information

species Zea mays
transcript GRMZM2G041980_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041980_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g13870.1 (Oryza sativa), 5'ss of exon 3
ATCGGGGAGCTGGCTGGGCTGGCCGTGGGCGCAACCATCCTGCTTAACGTGCTCATTGCCGGgtgagtacttacgatatatatacttactcttcgtgacgtgctcattgcctggaatatacatattttgtacaaaatttaagtagtacaaattataataagt-
|||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||  ||  | |   |   |    | || | || |  |   |    ||      |  ||  || | |  ||||     ||||| | ||||    |   ||  
ATCGGGGAGCTGGCAGGGCTGGCCGTTGGTGCAACCATCCTGCTTAACGTGCTGATTGCTGGgtacgttttaatttttctttctttcacgcatcatctctctcatgatgataattaattaattactcttcacaatgga-aagtatttcaaagaggatctagag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17930458|gb|BM267418.1|BM267418
EST:     ACGTGCTCATTGCCGG                         GCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT
genomic: ACGTGCTCATTGCCGGgtgagtactt ... caacaagcagGCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT
EST: gi|50330039|gb|CO525165.1|CO525165
EST:     CTGCTTAACGTGCTCATTGCCGG                         GCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT
genomic: CTGCTTAACGTGCTCATTGCCGGgtgagtactt ... caacaagcagGCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT
EST: gi|86473885|gb|DY240255.1|DY240255
EST:     GCTGGGCTGGCCGTGGGCGCAACCATCCTGCTTAACGTGCTCGTTGCCGG                         GCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT
genomic: GCTGGGCTGGCCGTGGGCGCAACCATCCTGCTTAACGTGCTCATTGCCGGgtgagtactt ... caacaagcagGCCCGTCTCCGGCGCGTCGATGAACCCGGCCCGGAGCGTGGGCCCGGCGCT