1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGTGAGAATGACAGGGGTGTTTCCTACACCTTTGGAGCTGACATAGTTGCTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAGgtattcattatcttatacacatttcttgtaagtaagaacagtttttcatggttgtgataatttctagttgatattattgcaacaagtaatgactatcatg...
species | Zea mays |
transcript | GRMZM2G041822_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAG GTCGTAGAGGATGGCTATGAGTTTTTCGCAAATCGTCGGCTTGTAACAATAEST: gi|32931499|gb|CF036311.1|CF036311
genomic: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAGgtattcatta ... aacttcacagGTCGTAGAGGATGGCTATGAGTTTTTCGCAAATCGCCAGCTTGTAACAATA
EST: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAG GTCGTAGAGGATGGCTATGAGTTTTTCGCAAATCGTCGGCTTGTAACAATAEST: gi|71325608|gb|DR799492.1|DR799492
genomic: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAGgtattcatta ... aacttcacagGTCGTAGAGGATGGCTATGAGTTTTTCGCAAATCGCCAGCTTGTAACAATA
EST: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCAACAG GTCGTAGAGGATGGCTATGAGTTTTT
genomic: CTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAGgtattcatta ... aacttcacagGTCGTAGAGGATGGCTATGAGTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGAGAATGACAGGGGTGTTTCCTACACCTTTGGAGCTGACATAGTTGCTGAGTTTCTTCAGAAACATGATCTAGATTTGATCTGCAGGGCTCACCAGgtattcattatcttatacacatttcttgtaagtaagaacagtttttcatggttgtgataatttctagttgatattattgcaacaagtaatgactatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaacag