Sequence
atgc intronic sequence ATGC exonic sequenceGAATGCCCGTTATCTCCCTTGTCACTGAAAGGTGTTAAGGCTGCTGGGTATGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttcagtgtttatgtttgctatttttagatttactttatgatattacctttttcagaaaatgtattgaggttcattgcgcacacaaaggccattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G08610.1 (Arabidopsis thaliana), 5'ss of exon 2
GAATGCCCGTTATCTCCCTTGTCACTGAAAGGTGTTAAGGCTGCTGGGTATGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttcagtgtttatgtttgctatttttagatttactttatgatattacctttttcagaaaatgtattgaggttcattgcgcacacaaaggccattg---
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CAATTCCCACTCTCTCCCTTATCGCTAAAAGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTATCATTCTCCAAGgtgaacttt--tcttcatgagccttgtttac-gatgcaaaaagaaaaaatgccatgatttagaaatgtagtgacaatttctaattgacgacatctcacaagct
upper sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 2
GAATGCCCGTTATCTCCCTTGTCACTGAAAGGTGTTAAGGCTGCTGGGTATGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttcagtgtttatgtttgctatttttagat-ttactttatgata--ttacctttt-tcagaa----aatgtattgaggttc-attgcgcacacaaaggccattg----------------
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CAGTTCCCACTGTCTCCCTTAACGTTAAAAGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCTCATTCTCCAAGgtgaactt--gcctaaaaggcagaaacttttgcatctttcttcatgattccttatgttttgtcatgacttaaacattttgaagcttgactattcctctattaattattcttccttggttttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211266309|gb|FL390567.1|FL390567EST: TGAACAGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAG GGAAGGATGTACTAGCCAAAGCAAAGACAGGAACTGGAAAAACTGTAGCTT
genomic: TGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttca ... ctatctacagGGAAGGATGTACTAGCCAAAGCAAAGACAGGAACTGGAAAAACTGTAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGCCCGTTATCTCCCTTGTCACTGAAAGGTGTTAAGGCTGCTGGGTATGAACGGATGACTGCTGTTCAGGAGGCTACTCTTCCTATTATACTTCAAGgttgatttcagtgtttatgtttgctatttttagatttactttatgatattacctttttcagaaaatgtattgaggttcattgcgcacacaaaggccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT